There are few studies that examine prevalence, quantity, and cellular procl
ivity of latent human herpesvirus 6 (HHV-6) in healthy populations. We exam
ined 69 tonsils with paired blood specimens from children without evidence
of acute infection. By polymerase chain reaction (PCR), HHV-6 was detected
at low levels in 100% of tonsils and 39% of blood samples (n = 27), suggest
ing that prevalence of latent HHV-6 infection is high in children and may b
e underestimated by PCR analysis of blood. Although HHV-6A and HHV-6B were
detected, HHV-6B predominated, being found in 97% of samples (n = 67). Tons
il sections from 7 cases were examined by in situ hybridization using 2 HHV
-6 probes and immunohistochemical analysis. Using both in situ hybridizatio
n and immunohistochemical analysis, all tissues revealed marked HHV-6-speci
fic staining in the squamous epithelium of the tonsillar crypts and rare po
sitive lymphocytes. We conclude that HHV-6 is present universally in tonsil
s of children, and tonsillar epithelium may be an important viral reservoir
in latent infection.