Involvement of the nervous system in Lyme borreliosis may occur with or wit
hout erythema migrans and it may present with a variety of neurological sym
ptoms. In this study we analysed phenotypic and genotypic characteristics o
f 40 Borrelia strains isolated from cerebrospinal fluid (CSF) of 38 Sloveni
an patients with different clinical manifestations of Lyme borreliosis. In
seven of the patients, Borreliae were also isolated from skin lesions. Spec
ies identification and plasmid profiles were determined by pulsed-field gel
electrophoresis and protein profiles by SDS-PAGE. MIO digestion profiles o
f Borrelia burgdorferi sensu lato DNA showed that 25 (62.5%) isolates were
B. garinii, 14 (35%) B. afzelii, and one (2.5%) B. burgdorferi sensu strict
o. All strains, except one, possessed a large plasmid and a varying number
of smaller plasmids, Three (7.5%) isolates exhibited an unusual plasmid pro
file, with a large plasmid dimer or three copies of the large plasmid. In p
rotein analyses, all strains expressed OspA protein. OspB was present signi
ficantly more often in B. afzelli than B. garinii strains (p=0.0000), while
OspC was more often present in B. garinii than B. afzelii strains (p=0.005
2). In the seven patients with Borreliae isolated also from the skin, the C
SF and skin isolates were identical, either B. garinii (six patients) or B.
afzelii (one patient). Species and plasmid heterogeneity as well as antige
n diversity could play a role in the pathogenesis of the infection. When co
mbined with our own earlier data, the results suggest species-related organ
otropism.