Gh. Krooshof et al., REPOSITIONING THE CATALYTIC TRIAD ASPARTIC-ACID OF HALOALKANE DEHALOGENASE - EFFECTS ON STABILITY, KINETICS, AND STRUCTURE, Biochemistry, 36(31), 1997, pp. 9571-9580
Haloalkane dehalogenase (DhlA) catalyzes the hydrolysis of haloalkanes
via an alkyl-enzyme intermediate. The covalent intermediate, which is
formed by nucleophilic substitution with Asp124, is hydrolyzed by a w
ater molecule that is activated by His289. The role of Asp260, which i
s the third member of the catalytic triad, was studied by site-directe
d mutagenesis. Mutation of Asp260 to asparagine resulted in a catalyti
cally inactive D260N mutant, which demonstrates that the triad acid As
p260 is essential for dehalogenase activity. Furthermore, Asp260 has a
n important structural role, since the D260N enzyme accumulated mainly
in inclusion bodies during expression, and neither substrate nor prod
uct could bind in the active-site cavity. Activity for brominated subs
trates was restored to D260N by replacing Asn148 with an aspartic or g
lutamic acid. Both double mutants D260N+N148D and D260N+N148E had a 10
-fold reduced k(cat) and 40-fold higher K-m values for 1,2-dibromoetha
ne compared to the wild-type enzyme. Pre-steady-state kinetic analysis
of the D260N+N148E double mutant showed that the decrease in k(cat) w
as mainly caused by a 220-fold reduction of the rate of carbon-bromine
bond cleavage and a 10-fold decrease in the rate of hydrolysis of the
alkyl-enzyme intermediate. On the other hand, bromide was released 12
-fold faster and via a different pathway than in the wild-type enzyme.
Molecular modeling of the mutant showed that Glu148 indeed could take
over the interaction with His289 and that there was a change in charg
e distribution in the tunnel region that connects the active site with
the solvent. On the basis of primary structure similarity between Dhl
A and other alpha/beta-hydrolase fold dehalogenases, we propose that a
conserved acidic residue at the equivalent position of Asn148 in DhlA
is the third catalytic triad residue in the latter enzymes.