Proper craniofacial development requires the orchestrated integration of mu
ltiple specialized tissue interactions. Recent analyses suggest that cranio
facial development is not dependent upon neural crest pre-programming as pr
eviously thought but is regulated by a more complex integration of cell and
tissue interactions. In the absence of neural crest cells it is still poss
ible to obtain normal arch patterning indicating that neural crest is not r
esponsible for patterning all of arch development. The mesoderm, endoderm a
nd surface ectoderm tissues play a role in the patterning of the branchial
arches, and there is now strong evidence that Hoxa2 acts as a selector gene
for the pathways that govern second arch structures.