Loss of fragile X mental retardation protein (FMRP) function causes the fra
gile X mental retardation syndrome. FMRP harbors three RNA binding domains,
associates with polysomes, and is thought to regulate mRNA translation and
/or localization, but the RNAs to which it binds are unknown. We have used
RNA selection to demonstrate that the FMRP RGG box binds intramolecular G q
uartets. This data allowed us to identify mRNAs encoding proteins involved
in synaptic or developmental neurobiology that harbor FMRP binding elements
. The majority of these mRNAs have an altered polysome association in fragi
le X patient cells. These data demonstrate that G quartets serve as physiol
ogically relevant targets for FMRP and identify mRNAs whose dysregulation m
ay underlie human mental retardation.