Volume-of-interest (VOI) extraction for radionuclide and anatomical me
asurements requires correct identification and delineation of the anat
omical feature being studied, We have developed a toolset for specifyi
ng three-dimensional (3-D) VOI's on a multislice positron emission tom
ography (PET) dataset, The software is particularly suited for specify
ing cerebral cortex VOI's which represent a particular gyrus or deep b
rain structure, A registered 3-D magnetic resonance image (MRI) datase
t is used to provide high-resolution anatomical information, both as o
blique two-dimensional (2-D) sections and as volume renderings of a se
gmented cortical surface, VOI's are specified indirectly in two dimens
ions by drawing a stack of 2-D regions on the MRI data, The regions ar
e tiled together to form closed triangular mesh surface models, which
are subsequently transformed into the observation space of the PET sca
nner, Quantification by this method allows calculation of radionuclide
activity in the VOI's, as well as their statistical uncertainties and
correlations, The methodology for this type of analysis and validatio
n results are presented.