Comparison of isocitrate dehydrogenase from three hyperthermophiles reveals differences in thermostability, cofactor specificity, oligomeric state, and phylogenetic affiliation
Ih. Steen et al., Comparison of isocitrate dehydrogenase from three hyperthermophiles reveals differences in thermostability, cofactor specificity, oligomeric state, and phylogenetic affiliation, J BIOL CHEM, 276(47), 2001, pp. 43924-43931
With the aim of gaining insight into the molecular and phylogenetic relatio
nships of isocitrate dehydrogenase (IDH) from hyperthermophiles, we carried
out a comparative study of putative IDHs identified in the genomes of the
eubacterium Thermotoga maritima and the archaea Aeropyrum pernix and Pyroco
ccus furiosus. An optimum for activity at 90 degreesC or above was found fo
r each IDH. PfIDH and ApIDH were the most thermostable with a melting tempe
rature of 103.7 and 109.9 degreesC, respectively, compared with 98.3 and 98
.5 degreesC for TmIDH and AfIDH, respectively. Analytical ultracentrifugati
on revealed a tetrameric oligomeric state for TmIDH and a homodimeric state
for ApIDH and PfIDH. TmIDH and ApIDH were NADP-dependent (K-m(NADP) of 55.
2 and 44.4 muM, respectively) whereas PfIDH was NAD-dependent (K-m(NAD) of
68.3 muM). These data document that TmIDH represents a novel tetrameric NAD
P-dependent form of IDH and that PfIDH is a homodimeric NAD-dependent IDH n
ot previously found among the archaea. The homodimeric NADP-IDH present in
A. pernix is the most common form of IDH known so far. The evolutionary rel
ationships of ApIDH, PfIDH, and TmIDH with all of the available amino acid
sequences of di- and multimeric IDHs are described and discussed.