Mus81, a protein with homology to the XPF subunit of the ERCC1-XPF endonucl
ease, is important for replicational stress tolerance in both budding and f
ission yeast. Human Mus8l has associated endonuclease activity against stru
cture-specific oligonucleotide substrates, including synthetic Holliday jun
ctions. Mus81-associated endonuclease resolves Holliday junctions into line
ar duplexes by cutting across the junction exclusively on strands of like p
olarity. In addition, Mus8l protein abundance increases in cells following
exposure to agents that block DNA replication. Taken together, these findin
gs suggest a role for Mus8l in resolving Holliday junctions that arise when
DNA replication is blocked by damage or by nucleotide depletion. Mus8l is
not related by sequence to previously characterized Holliday junction resol
ving enzymes, and it has distinct enzymatic properties that suggest it uses
a novel enzymatic strategy to cleave Holliday junctions.