Mechanisms composing Drosophila's clock are conserved within the animal kin
gdom. To learn how such clocks influence behavioral and physiological rhyth
ms, we determined the complement of circadian transcripts in adult Drosophi
la heads. High-density oligonucleotide arrays were used to collect data in
the form of three 12-point time course experiments spanning a total of 6 da
ys. Analyses of 24 hr Fourier components of the expression patterns reveale
d significant oscillations for similar to 400 transcripts. Based on seconda
ry filters and experimental verifications, a subset of 158 genes showed par
ticularly robust cycling and many oscillatory phases. Circadian expression
was associated with genes involved in diverse biological processes, includi
ng learning and memory/synapse function, vision, olfaction, locomotion, det
oxification, and areas of metabolism. Data collected from three different c
lock mutants (per(o), tim(o1), and Clk(Jrk)), are consistent with both know
n and novel regulatory mechanisms controlling circadian transcription.