D. Hoffmann et al., Development and application of PCR primers for the detection of the tfd genes in Delftia acidovorans P4a involved in the degradation of 2,4-D, ACT BIOTECH, 21(4), 2001, pp. 321-331
Primers specific for the genes tfdD, tfdE and tfdF, derived from conserved
aminoacid sequence motifs of the corresponding homologous enzymes, and prim
ers specific for the genes tfdA and tfdB as well as tfdC taken from the lit
erature were applied in PCR reactions using the genomic DNA of Delftia acid
ovorans P4a as the template. PCR products were obtained with all primer pai
rs that were similar in size to those found with the genomic DNA of strains
harbouring plasmid pJP4 as the carrier of tfd genes. The nucleotide sequen
ces and the corresponding amino acid sequences of the PCR products obtained
with Strain P4a were compared with the sequence databases. According to BL
AST analyses, the partial sequences of tfdA and tfdB exhibited a 94-99% deg
ree of identity with the homologous sequences of the 2,4-D-degrading strain
s Achromobacter xylosoxidans subsp. denitrificans EST4002 (pEST4011), Burkh
olderia sp. RASC, Variovorax paradoxus TV1 (pTV1) and Burkholderia cepacia
2a (pIJB1), whereas the partial sequences of tho tfdC, tfdD, tfdE and tfdF
genes revealed a 96-100% degree of identity with the homologous sequences o
f the chlorobenzene-utilizing strains Ralstonia eutropha NH9 (pENH91), Pseu
domonas chlororaphis RW71 and Pseudomonas sp. P51 (pP51).