Developing organisms may contain billions of cells destined to differentiat
e in numerous different ways. One strategy organisms use to simplify the or
chestration of development is the separation of cell populations into disti
nct functional units. Our expanding knowledge of boundary formation and fun
ction in different systems is beginning to reveal general principles of thi
s process. Fields of cells are subdivided by the interpretation of morphoge
n gradients, and these subdivisions are then maintained and refined by loca
l cell-cell interactions. Sharp and stable separation between cell populati
ons requires special mechanisms to keep cells segregated, which in many cas
es appear to involve the regulation of cell affinity. Once cell populations
become distinct, specialized cells are often induced along the borders bet
ween them. These boundary cells can then influence the patterning of surrou
nding cells, which can result in progressively finer subdivisions of a tiss
ue. Much has been learned about the signaling pathways that establish bound
aries, but a key challenge for the future remains to elucidate the cellular
and molecular mechanisms that actually keep cell populations separated.