Segmentation of long genomic sequences into domains with homogeneous composition with BASIO software

Authors
Ramensky, VE Makeev, VJ Roytberg, MA Tumanyan, VG
Citation
Ve. Ramensky et al., Segmentation of long genomic sequences into domains with homogeneous composition with BASIO software, BIOINFORMAT, 17(11), 2001, pp. 1065-1066
Citations number
10
Categorie Soggetti
Multidisciplinary
Journal title
BIOINFORMATICS
ISSN journal
13674803 → ACNP
Volume
17
Issue
11
Year of publication
2001
Pages
1065 - 1066
Database
ISI
SICI code
1367-4803(200111)17:11<1065:SOLGSI>2.0.ZU;2-#
Abstract
We present a software system BASIO that allows one to segment a sequence in to regions with homogeneous nucleotide composition at a desired length scal e. The system can work with arbitrary alphabet and therefore can be applied to various (e.g. protein) sequences. Several sequences of complete genomes of eukaryotes are used to demonstrate the efficiency of the software.