Two PCR-RFLP mitochondrial DNA (mtDNA) markers were developed through
the cloning and sequencing of mtDNA from the scallop Pecten maximus, a
nd were used to study genetic differentiation of UK and Atlantic coast
populations of this species. Although no distinct pattern of mtDNA ha
plotype frequencies was apparent and no diagnostic haplotypes were ide
ntified for any population, sequence divergence data provided convinci
ng evidence that a P. maximus sample taken from Mulroy Bay, fire, a se
mi-enclosed sea lough, was differentiated from ail other samples. Howe
ver, this could not be unequivocally attributed to a restriction in ge
ne flow, as the sample consisted of an ongrown single spatfall, which
may not have been representative of the wild population. Despite the i
nability to separate populations on the basis of haplotype frequency,
it was noteworthy that the frequency pattern of the commonest haplotyp
e varied between sampling sites in a manner similar to that of allozym
e allele frequencies in Aequipecten opercularis, a scallop species wit
h a similar distribution and life history: for which there is evidence
of population subdivision. Pecten maximus from St Brieuc Bay, reasone
d to be a self-recruiting population from reproductive and physiologic
al evidence, could not be separated from other populations using mtDNA
markers. Further investigation of this population with alternative ma
rkers is warranted.