Acridone synthase (ACS) and chalcone synthase (CHS) catalyse the pivotal re
actions in the formation of acridone alkaloids or flavonoids. While acridon
e alkaloids are confined almost exclusively to the Rutaceae, flavonoids occ
ur abundantly in all seed-bearing plants. ACSs and CHSs had been cloned fro
m Ruta graveolens and shown to be closely related polyketide synthases whic
h use N-methylanthraniloyl-CoA and 4-coumaroyl-CoA, respectively, as the st
arter substrate to produce the acridone or naringenin chalcone. As proposed
for the related 2-pyrone synthase from Gerbera, the differential substrate
specificities of ACS and CHS might be attributed to the relative volume of
the active site cavities. The primary sequences as well as the immunologic
al cross reactivities and molecular modeling studies suggested an almost id
entical spatial structure for ACS and CHS. Based on the Ruta ACS2 model the
residues Ser132, Ala133 and Val265 were assumed to play a critical role in
substrate specificity. Exchange of a single amino acid (Val265Phe) reduced
the catalytic activity by about 75% but grossly shifted the specificity to
wards CHS activity, and site-directed mutagenesis replacing all three resid
ues by the corresponding amino acids present in CHS (Ser132Thr, Ala133-Ser
and Val265Phe) fully transformed the enzyme to a functional CHS with compar
atively marginal ACS activity. The results suggested that ACS divergently h
as evolved from CHS by very few amino acid exchanges, and it remains to be
established why this route of functional diversity bas developed in the Rut
aceae only. (C) 2001 Federation of European Biochemical Societies. Publishe
d by Elsevier Science B.V. All rights reserved.