The Belize barrier reef complex includes approximately 250 km of barrier re
ef and three off-shelf atolls up to 40 kin cast of the barrier reef. Multiv
ariate analysis techniques are being tested for their ability to discrimina
te patterns of geographical zonation in reef community structure. A stratif
ied, haphazard video-based monitoring scheme has been established at 17 win
dward fore-reef sites. This preliminary community classification and ordina
tion provides a baseline description of reef communities and indicates a si
gnificant difference (1) between atoll versus barrier reef sites, and (2) b
etween southern, northern and central barrier reef sites, despite a relativ
ely high degree of similarity. Two pairs of sites indicate there are signif
icant differences in community structure between 'impacted' and 'non-impact
ed' sites. In addition, the key taxa responsible for these differences (bas
ed on the Bray-Curtis similarity matrix) were identified and include Agaric
ia tenuifolia and macro algae. Most previous studies have examined stony co
ral species in such analyses, Because non-coral biota are normally the majo
r community components on Caribbean reefs, they should be included in multi
variate analyses of reef communities. Reanalysis of these data using either
major benthic substrate categories or only stony coral species produces le
ss discriminating results and illustrates the importance of using a communi
ty approach with as much taxonomic detail as possible. Understanding the un
derlying similarities and differences in biological communities throughout
this large reef area is the first step towards the goal of linking these pa
tterns to environmental and management-linked influences.