Fusarium culmorum and F. graminearum Groups 1 and 2 cause seedling bli
ght, crown rot, foot rot and head blight in wheat and rye that may aff
ect grain yield and quality for baking and feeding. This review starts
with an analysis of Fusarium populations with regard to their genetic
variation for aggressiveness, mycotoxin production, and isolate-by-ho
st genotype interaction. To assess resistance in the different host gr
owth stages, quantitative inoculation and disease assessment technique
s are necessary. Based on estimated population parameters, breeding st
rategies are reviewed to improve Fusarium resistance in wheat and rye.
Epidemiological and toxicological aspects of Fusarium resistance that
are important for resistance breeding are discussed. F. culmorum and
F. graminearum display large genetic Variation for aggressiveness in i
solate collections and in naturally occurring populations. The product
ion of mycotoxins, especially deoxynivalenol and its derivatives, is a
common trait in these populations. Significant isolate-by-host genoty
pe interactions were not found across environments in wheat and rye. A
rtificial infections in the field are indispensable for improving Fusa
rium crown rot, foot rot and head blight resistance in wheat and rye.
For a reliable disease assessment of large populations, disease severi
ty ratings were found to be the most convenient. The differentiation o
f host resistance is greatly influenced by an array of nongenetic fact
ors (macro-environment, microclimate, host growth stage, host organ) t
hat show significant interactions with host genotype. Selection for en
vironmentally stable resistance has to be performed in several environ
ments under a maximum array of different infection levels. Selection i
n early growth stages or on one plant organ does not in most cases all
ow prediction of resistance in adult-plant stages or another plant org
an. Significant genetic variation for resistance exists for all Fusari
um-incited diseases in breeding populations of wheat and rye. The path
o-systems studied displayed a prevalence of additive gene action with
no consistent specific combining ability effects and thus rapid progre
ss can be expected from recurrent selection. In wheat, intensive testi
ng of parental genotypes allows good prediction of the mean head bligh
t resistance after crossing. Subsequent selection during selfing gener
ations enables the use of transgression towards resistance. In hybrid
breeding of winter rye, the close correlation between foot rot resista
nce of inbred lines and their GCA effects implies that selection based
on the lines per se should be highly effective. This is not valid for
F. culmorum head blight of winter rye caused by a greater susceptibil
ity of the inbred lines compared to their crosses. For both foot rot a
nd head blight resistance, a high correlation between the resistance t
o F. graminearum and F. culmorum was found in wheat and rye. Mycotoxin
accumulation occurs to a great extent in naturally and artificially i
nfected plant stands. The correlation between resistance traits and my
cotoxin contents are medium and highly dependent on the environment. F
urther experiments are needed to clarify whether greater resistance wi
ll lead to a correlated reduction of the mycotoxin content of the grai
ns under natural infection.