Thirteen native pear species have been identified in China, of which P. arm
eniacaefolia Yu and P. sinkiangensis Yu are specific to Xinjiang. P. armeni
acaefolia grows wild and a few cultivars have been assigned to this species
. Cultivars of P. sinkiangensis have been suspected to be of hybrid origin
involving P. communis L. and P. bretschneideri Rehd. In this study, traditi
onal pear cultivars in Xinjiang were evaluated using RAPD markers and compa
red with representatives of Occidental pear species, cultivars of P. commun
is and East Asian pear accessions. The combination of 72 pear accessions an
d 20 selected primers produced 231 scorable polymorphic RAPD bands, of whic
h some were specific to certain species. Five main groups of pear accession
s could be distinguished from UPGMA analysis: 1) P. xerophila Yu, its relat
ives and one cultivar of P. ussuriensis Max., 2) cultivars of P. sinkiangen
sis, 3) cultivars of P. pyrifolia Nakai and P. bretschneideri, 4) wild Occi
dental species, cultivars of P. communis and P. armeniacaefolia, and 5) hyb
rids between P. communis and Chinese or Japanese pear cultivars. The result
of PCA generally agrees with that based on UPGMA. Based on RAPD data, some
cultivars traditionally classified as P. bretschneideri should be assigned
to P. sinkiangensis. Some heirloom cultivars assigned to P. communis were
found to be of hybrid origin involving the Chinese white pear (P. bretschne
ideri) or sand pear (P. pyrifolia). Our results confirmed that P. sinkiange
nsis is of hybrid origin and at least P. communis, P. armeniacaefolia and C
hinese white pears or sand pears have been involved. A further study is nee
ded to understand how pear species and cultivars in Xinjiang are related to
those originated from countries in Central Asia.