Understanding the molecular basis of quantitative genetic variation is a pr
incipal goal for biomedicine. Although the complex genetic architecture of
quantitative traits has so far largely frustrated attempts to identify gene
s in humans by standard linkage methodologies, quantitative trait loci (QTL
) have been mapped in plants, insects and rodents. However, identifying the
molecular bases of QTL remains a challenge. Here, we discuss why this is a
nd how new experimental strategies and analytical techniques, combined with
the fruits of the genome projects, are beginning to identify candidate gen
es for QTL studies in several model organisms.