While the signaling properties of ubiquitin depend on the topology of polyu
biquitin chains, little is known concerning the molecular basis of specific
ity in chain assembly and recognition. UEV/Ubc complexes have been implicat
ed in the assembly of Lys63-linked polyubiquitin chains that act as a novel
signal in postreplicative DNA repair and I kappaB alpha kinase activation.
The crystal structure of the Mms2/Ubc13 heterodimer shows the active site
of Ubc13 at the intersection of two channels that are potential binding sit
es for the two substrate ubiquitins. Mutations that destabilize the heterod
imer interface confer a marked UV sensitivity, providing direct evidence th
at the intact heterodimer is necessary for DNA repair. Selective mutations
in the channels suggest a molecular model for specificity in the assembly o
f Lys63-linked polyubiquitin signals.