Nearly 40 years ago, Holliday proposed a four-stranded complex or junction
as the central intermediate in the general mechanism of genetic recombinati
on. During the past two years, six single-crystal structures of such DNA ju
nctions have been determined by three different research groups. These stru
ctures all essentially adopt the antiparallel stacked-X conformation, but c
an be classified into three distinct categories: RNA-DNA junctions; ACC tri
nucleotide junctions; and drug-induced junctions. Together, these structure
s provide insight into how local and distant interactions help to define th
e detailed and general physical features of Holliday junctions at the atomi
c level.