Based on ecological and behavioural studies it has been assumed that Eurasi
an perch (Perca fluviatilis) within one lake may not represent one panmicti
c population, but that they are subdivided into subpopulations. In order to
investigate the genetic substructuring of populations, we used gene freque
ncies of five microsatellite loci to compare perch from six different sites
from Lake Constance, Germany, and as outgroups perch from the lake Grosser
Vatersee, Berlin, and two Swiss lakes, Lake Zurich and Lake Walensee. We e
xamined whether homing behaviour of subadults to the spawning sites of thei
r parents occurs and whether philopatric behaviour of adults results in sig
nificant population genetic substructuring. The distribution of genetic var
iation revealed two major, genetically distinct populations in Lake Constan
ce: one in the eastern part of the lake and another in the western part (G(
ST)=0.07). Within each of these two populations, no further genetic substru
cturing, nor any indication of inbreeding could be detected, either because
genetic exchange was sufficiently high or because the time since separatio
n has been too short. Homing behaviour of subadults to parental spawning si
tes after having spent several weeks of their life cycle in the pelagic zon
e could not be detected. Instead, subadults stay within either the western
or the eastern region of the lake. There is evidence that some shoals conta
in full- and half-sibs. Despite females spawning in close proximity to each
other, some siblings stay together. This might suggest that perch possess
kin preferences and kin recognition.