Enzymes of the mitochondrial respiratory chain serve as proton pumps, using
the energy made available from electron transfer reactions to transport pr
otons across the inner mitochondrial membrane and create an electrochemical
gradient used for the production of ATP. The ATP synthase enzyme is revers
ible and can also serve as a proton pump by coupling ATP hydrolysis to prot
on translocation. Each of the respiratory enzymes uses a different strategy
for performing proton pumping. In this work, the strategies are described
and the structural bases for the action of these proteins are discussed in
light of recent crystal structures of several respiratory enzymes. The mech
anisms and efficiency of proton translocation are also analyzed in terms of
the thermodynamics of the substrate transformations catalyzed by these enz
ymes.