Machado-Joseph disease (MJD) is an autosomal dominant neurodegenerative dis
order that is clinically characterized by cerebellar ataxia and various ass
ociated symptoms. The disease is caused by an unstable expansion of the CAG
repeat in the MJD gene. This gene is mapped to chromosome 14q32.1. To dete
rmine its genomic structure, we constructed a contig composed of six cosmid
clones and eight bacterial artificial chromosome (BAC) clones. It spans ap
proximately 300kb and includes MJD. We also determined the complete sequenc
e (175,330bp) of B445M7, a human BAC clone that contains MJD. The MJD gene
was found to span 48,240bp and to contain 11 exons. Northern blot analysis
showed that MJD mRNA is ubiquitously expressed in human tissues, and in at
least four different sizes; namely, 1.4, 1.8, 4.5, and 7.5kb. These differe
nt mRNA species probably result from differential splicing and polyadenylat
ion, as shown by sequences of the 21 independent cDNA clones isolated after
the screening of four human cDNA libraries prepared from whole brain, caud
ate, retina, and testis. The sequences of these latter clones relative to t
he MJD gene in B345M7 indicate that there are three alternative splicing si
tes and eight polyadenylation signals in MJD that are used to generate the
differently sized transcripts.