Nucleosomal fragmentation of DNA is a hallmark of apoptosis (programmed cel
l death)(1), and results from the activation of nucleases in cells undergoi
ng apoptosis. One such nuclease, DNA fragmentation factor (DFF, a caspase-a
ctivated deoxyribonuclease (CAD) and its inhibitor (ICAD)), is capable of i
nducing DNA fragmentation and chromatin condensation after cleavage by casp
ase-3 (refs 2-4). However, although transgenic mice lacking DFF45 or its ca
spase cleavage site have significantly reduced DNA fragmentation(5,6), thes
e mice still show residual DNA fragmentation and are phenotypically normal(
5-7). Here we report the identification and characterization of another nuc
lease that is specifically activated by apoptotic stimuli and is able to in
duce nucleosomal fragmentation of DNA in fibroblast cells from embryonic mi
ce lacking DFF. This nuclease is endonuclease G (endoG), a mitochondrion-sp
ecific nuclease that translocates to the nucleus during apoptosis. Once rel
eased from mitochondria, endoG cleaves chromatin DNA into nucleosomal fragm
ents independently of caspases. Therefore, endoG represents a caspase-indep
endent apoptotic pathway initiated from the mitochondria.