Complex allergenic sources such as moulds, foods and mites contain large pa
nels of IgE-binding molecules which need to be cloned, produced and charact
erized in order to mimic the entire allergenicity of whole extracts reconst
ituted by mixing single standardized recombinant allergens. Phage display o
f cDNA libraries allows selective enrichment of allergen-expressing clones
using IgE from allergic patients. For the characterization of all different
clones present in enriched cDNA libraries in a fast and cost-effective way
, however, high-throughput screening technology is required. We have used a
high-throughput, quantitative technology for fast identification of all di
fferent clones present in selectively enriched phage surface-displayed cDNA
libraries in order to characterize whole allergenic repertoires from compl
ex allergenic sources. The strategy, based on a combination of phage displa
y and high-density arrays, allowed fast discovery of panels of related stru
ctures from different allergenic sources. They cover secreted, cytoplasmic
and structural proteins with or without enzymatic activity and offer a rati
onal explanation for the IgE-mediated cross-reactivity frequently encounter
ed in clinical practice.