Model genetics and genomics have been developed as tools for studying the t
hird largest family of flowering plants, the Leguminosae, which includes im
portant crop plants. Functional genomics strategies for the global analysis
of gene expression, the elucidation of pathways and reverse genetics are e
stablished. These approaches provide new possibilities for investigating rh
izobial as well as mycorrhizal endosymbiosis. Plant genes with central func
tions in these mutualistic interactions have been identified by positional
cloning and gene tagging. With progress in Lotus japonicus genome sequencin
g, which was recently initiated by Japanese researchers, comparative genomi
cs will contribute to our understanding of symbiosis, pathogenesis and the
evolution of plant genomes.