Nucleotide sequences of Plasmodium vivax A-type rDNA ITS1, 5.8S, and ITS2.Elaboration of retrospective PCR diagnostics of malaria using stained thick blood smears

Citation
Nv. Ivanova et al., Nucleotide sequences of Plasmodium vivax A-type rDNA ITS1, 5.8S, and ITS2.Elaboration of retrospective PCR diagnostics of malaria using stained thick blood smears, MOL BIOL, 35(3), 2001, pp. 435-443
Citations number
11
Categorie Soggetti
Molecular Biology & Genetics
Journal title
MOLECULAR BIOLOGY
ISSN journal
00268933 → ACNP
Volume
35
Issue
3
Year of publication
2001
Pages
435 - 443
Database
ISI
SICI code
0026-8933(200105/06)35:3<435:NSOPVA>2.0.ZU;2-A
Abstract
Stages life cycle of the malaria parasite differ in the rate of replication and the structural properties of functionally active A-, S-, and O-type ri bosomes. Regions of A-type rDNA including ITS1, 5.85, and ITS2 from two str ains of Plasmodium vivax with different incubation periods were amplified a nd sequenced. No substantial differences in the sequences of two strains we re revealed. Phylogenetic analysis of the obtained and homologous sequences of ITS I rDNA of A, S, and O types of P. vivax; A and S types of P. falcip arum; and Cryptosporidium parvum, Eimeria maxima, Toxoplasma gondii as outg roup, by the maximum parsimony method using PAUP 4.0 revealed that divergen ce of ITS I might have occurred after speciation and at different rates in individual lineages of the Plasmodium genus. Basing on the results of the a nalysis of orthologous sequences of I! I vivax and P. falciparum, we develo ped genus- and species-specific primers for PCR diagnostics of malaria, as well as a one-step effective method of DNA isolation from Giemsa-Romanovsky -stained thick blued smears. It was demonstrated that stained preparations could he a reliable source of plasmodial DNA, and the quality of preparatio ns and storage time (10-20 years) did not interfere with the results of PCR analysis.