Cloning by nuclear transfer (NT) is an inefficient process in which most cl
ones die before birth and survivors often display growth abnormalities. In
an effort to correlate gene expression with survival and fetal overgrowth,
we have examined imprinted gene expression in both mice cloned by nuclear t
ransfer and in the embryonic stem (ES) cell donor populations from which th
ey were derived. The epigenetic state of the ES cell genome was found to be
extremely unstable. Similarly, variation in imprinted gene expression was
observed in most cloned mice, even in those derived from ES cells of the sa
me subclone. Many of the animals survived to adulthood despite widespread g
ene dysregulation, indicating that mammalian development may be rather tole
rant to epigenetic aberrations of the genome. These data imply that even ap
parently normal cloned animals may have subtle abnormalities in gene expres
sion.