To illuminate the function and evolutionary history of both genomes, we seq
uenced mouse DNA related to human chromosome 19. Comparative sequence align
ments yielded confirmatory evidence for hypothetical genes and identified e
xons, regulatory elements, and candidate genes that were missed by other pr
edictive methods. Chromosome-wide comparisons revealed a difference between
single-copy HSA19 genes, which are overwhelmingly conserved in mouse, and
genes residing in tandem familiar clusters, which differ extensively in num
ber, coding capacity, and organization between the two species. Finally, we
sequenced breakpoints of all 15 evolutionary rearrangements, providing a v
iew of the forces that drive chromosome evolution in mammals.