In populations derived from commercial hybrid rice combination Shanyou 10,
F-1 heterosis and F-2 inbreeding depression were observed on grain yield (G
YD) and number of panicles (NP). Using marker loci evenly distributed on th
e linkage map as fixing factors, the F-2 population was divided into sub-po
pulations. In a large number of sub-populations, significant correlations w
ere observed between heterozygosity and GYD, and between heterozygosity and
NP. This was especially true in type III sub-populations in which the geno
type of a fixing factor was heterozygotes. In type III sub-populations, 15
QTL for GYD and 13 QTL for NP were detected, of which the majority exhibite
d over-dominance effects for increasing the trait values. This study showed
that over-dominance played an important role in the genetic control of het
erosis in rice.