Ionization properties of titratable groups in ribonuclease T-1 - I. pK(a) values in the native state determined by two-dimensional heteronuclear NMR spectroscopy

Citation
N. Spitzner et al., Ionization properties of titratable groups in ribonuclease T-1 - I. pK(a) values in the native state determined by two-dimensional heteronuclear NMR spectroscopy, EUR BIOPHYS, 30(3), 2001, pp. 186-197
Citations number
63
Categorie Soggetti
Biochemistry & Biophysics
Journal title
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS
ISSN journal
01757571 → ACNP
Volume
30
Issue
3
Year of publication
2001
Pages
186 - 197
Database
ISI
SICI code
0175-7571(2001)30:3<186:IPOTGI>2.0.ZU;2-3
Abstract
pK(a) values of amino acid side chains of ribonuclease TI have been determi ned from the pH dependence of C-13 and N-15 resonances. It was possible to derive pK(a) values of single protonation or deprotonation sites of carboxy late and imidazole groups. Deviations from pK(a) values of free amino acids could be interpreted with electrostatic interactions of corresponding side chains with the protein environment. In particular, the interaction betwee n H27 and E82 led to an increase of the H27 pK(a) and a decrease of the E82 pK(a). The pK(a) of E28 at the C-terminal end of the cc-helix was increase d because of the dipolar character of the alpha -helix. D76 did not titrate in the investigated pH range of about 2-9. From the chemical shift value t his buried side chain seems to be protonated. The pK(a) values of side chai ns in the active site deviate from a normal behaviour. The lower pK(a) valu e of E58 may be interpreted with the close proximity of this side chain wit h positively charged H40 and R77. A novel two-dimensional H-1(C-13(delta))C -13(gamma) correlation experiment was developed to observe the pH dependenc e of the chemical shifts of the C-gamma resonances of histidine residues. F rom the inspection of the C-gamma chemical shift-pH profiles it was possibl e to determine the predominant tautomeric form for the histidine residues a t higher pH values.