Regulated fusion of mammalian lysosomes is critical to their ability to acq
uire both internalized and biosynthetic materials. Here, we report the iden
tification of a novel human protein, hVam6p, that promotes lysosome cluster
ing and fusion in vivo. Although hVam6p exhibits homology to the Saccharomy
ces cerevisiae vacuolar protein sorting gene product Vam6p/Vps39p, the pres
ence of a citron homology (CNH) domain at the NH2 terminus is unique to the
human protein. Overexpression of hVam6p results in massive clustering and
fusion of lysosomes and late endosomes into large (2-3 mum) juxtanuclear st
ructures. This effect is reminiscent of that caused by expression of a cons
titutively activated Rab7. However, hVam6p exerts its effect even in the pr
esence of a dominant-negative Rab7, suggesting that it functions either dow
nstream of, or in parallel to, Rab7. Data from gradient fractionation, two-
hybrid, and coimmunoprecipitation analyses suggest that hVam6p is a homooli
gomer and that its self-assembly is mediated by a clathrin heavy chain repe
at domain in the middle of the protein. Both the CNH and clathrin heavy cha
in repeat domains are required for induction of lysosome clustering and fus
ion. This study implicates hVam6p as a mammalian tethering/docking factor c
haracterized with intrinsic ability to promote lysosome fusion in vivo.