DNA topoisomerase II alpha is a nuclear enzyme essential for DNA metab
olism and cell cycle progression. Previous studies have shown that hum
an tumor cell lines can express more than one topoisomerase II alpha i
soform through alternative splicing. A 160-kDa isoform of topoisomeras
e II alpha has been described in several cell lines selected for resis
tance to inhibitors of DNA topoisomerase, but its physiological functi
on has not been defined. In the present study, we have identified two
major (160 and 140 kDa) and two minor (150 and 145 kDa) isoforms of to
poisomerase II alpha in drug-sensitive human leukemic CEM cells, all o
f which have lost C-terminal regions that produce epitopes recognized
by specific antibodies. Reverse transcription-polymerase chain reactio
n and molecular doning identified four alternatively spliced transcrip
ts of topoisomerase II alpha from CEM cells. Furthermore, nucleotide s
equencing indicated that the 160-kDa isoform is encoded by two transcr
ipts derived from alternative splicing at a different C-terminal site
and that the other two transcripts likely code for the 150-kDa isoform
. Although the full-length topoisomerase II alpha resided in the cell
nucleus, all altered isoforms, except the 160 kDa that was located in
both cytoplasmic and nuclear extracts in about equal amount, were show
n to be present predominantly in the cytosol. In contrast to the obser
vations of other groups, we have not found an association of the topoi
somerase II alpha isoforms with drug resistance. Rather, our results s
uggest that expression of topoisomerase II alpha isoforms is cell type
specific or might be associated with the neoplastic phenotype of the
cells. Thus, although T-lineage tumor cell lines examined (CEM, Jurkat
, and H9) displayed altered topoisomerase II alpha isoforms, normal T
cells expressed only a full-length copy of the gene. Together, these r
esults suggest that expression of altered topoisomerase II alpha isofo
rms is not limited to drug resistance, but might be a feature of neopl
astic cells.