An effective method for synthesising branched oligonucleotides on soli
d phase in the 5' to 3' direction has been developed. Special branch-p
oint monomers enable the synthesis of branched oligonucleotides which
can have sequences of different length and base composition attached t
o tile 2'-and 3'-hydroxyl groups of the branch point ribonucleoside. T
he branched oligonucleotides are assembled on commercial DNA synthesis
ers, the crude products are readily purified by reversed phase HPLC an
d the fully deprotected products are conveniently analysed by mass spe
ctrometry. (C) 1997 Elsevier Science Ltd.