We have identified two distinct subunits of 20 S proteasomes that are
associated with RNase activity. Proteasome subunits zeta and iota, elu
ted from two-dimensional Western blots, hydrolysed tobacco mosaic viru
s RNA, whereas none of the other subunits degraded this substrate unde
r the same conditions. Additionally, proteasomes were dissociated by 6
M urea, and subunit zeta, containing the highest RNase activity, was
isolated by anion-exchange chromatography and gel filtration. Purified
subunit zeta migrated as a single spot on two-dimensional PAGE with a
molecular mass of approx. 28 kDa. Addition of anti-(subunit zeta) ant
ibodies led to the co-precipitation of this proteasome subunit and nuc
lease activity. This is the first evidence that proteasomal alpha-type
subunits are associated with an enzymic activity, and our results pro
vide further evidence that proteasomes may be involved in cellular RNA
metabolism.