The strategies used for isolation and structural elucidation of pharma
cologically active metabolites from marine organisms are discussed, wi
th examples of cytotoxic and antihistaminic compounds from marine equi
noderms, sponges, gorgonians, ascidians, and tunicates from the author
's laboratory. Special attention will be paid to isolation procedures
adapted to the physical and chemical characteristics of the compounds
isolated, particularly to their polarity and lipo-or hydrophilic chara
cter. Examples of isolation from water-soluble material of highly pola
r metabolites such as saponins, polyhydroxysteroids, alkaloids, and am
ino acids will be presented. Sesquiterpene quinones, polypropionates,
peptides, and depsipeptides from the extracts of medium or low polarit
y are also described. The relevance of recent spectroscopic techniques
-especially exhaustive 2D NMR and MS analysis-in the structural elucid
ation of complex structures and the usefulness of new reagents for the
assignment of absolute configuration by H-1 NMR are presented.