During evolution prokaryotes have developed different envelope structu
res exterior to the cell wall proper. Among these surface components a
re regularly arranged S-layers and capsules. The structural characteri
zation and the detailed chemical analysis of these surface molecules i
s a prerequisite to understand their biosynthesis and functional role(
s) at the molecular level. Of particular interest are the glycosylated
S-layer proteins which belong to the first prokaryotic glycoproteins
ever described. Their characterization was performed on strains belong
ing to the thermophilic Bacillaceae and included structural studies an
d experiments to learn about the pathways for the glycan biosynthesis
of S-layer glycoproteins. As an example for non-glycosylated S-layer p
roteins those of Lactobacillus helveticus strains are described in det
ail. Recently, a novel type of bacterial glycoconjugate was observed i
n the cell envelope of the extremely halophilic archaeon Natronococcus
occultus which consists of a glycosylated polyglutamyl polymer. Besid
e the conventional biochemical techniques for the analysis new sophist
icated instrumental methods such as X-ray photoelectron spectroscopy a
nd matrix-assisted laser desorption ionization or electrospray ionizat
ion mass spectrometry have been introduced for the analysis of the pro
tein and glycan portions of these cell surface macromolecules.