In organic solvents gramicidin A (gA) occurs as a mixture of slowly in
terconverting double-stranded dimers. Membrane-spanning gA channels, i
n contrast, are almost exclusively single-stranded beta(6.3)-helical d
imers. Based on spectroscopic evidence, it has previously been conclud
ed that the conformational preference of gA in phospholipid bilayers v
aries as a function of the degree of unsaturation of the acyl chains.
Double-stranded pi pi(5.6)-helical dimers predominate (over single-str
anded beta(6.3)-helical dimers) in lipid bilayer membranes with polyun
saturated acyl chains. We therefore examined the characteristics of ch
annels formed by gA in 1-palmitoyl-2-oleoylphosphatidylcholine/n-decan
e, 1,2-dioleoylphosphatidylcholine/n-decane, and 1,2-dilinoleoylphosph
atidylcholine/n-decane bilayers. We did not observe long-lived channel
s that could be conducting double-stranded pi pi(5.6)-helical dimers i
n any of these different membrane environments. We conclude that the s
ingle-stranded beta(6.3)-helical dimer is the only conducting species
in these bilayers. Somewhat surprisingly, the average channel duration
and channel-forming potency of gA are increased in dilinoleoylphospha
tidylcholine/n-decane bilayers compared to 1-palmitoyl-2-oleoylphospha
tidylcholine/n and dioleoylphosphatidylcholine/n-decane bilayers. To t
est for specific interactions between the aromatic side chains of gA a
nd the acyl chains of the bilayer, we examined the properties of chann
els formed by gramicidin analogues in which the four tryptophan residu
es were replaced with naphthylalanine (gN), tyrosine (gT), and phenyla
lanine (gM). The results show that all of these analogue channels expe
rience the same relative stabilization when going from dioleoylphospha
tidylcholine to dilinoleoylphosphatidylcholine bilayers.