We describe a capillary electrophoresis-patch clamp (CE-PC) analysis o
f biomolecules that activate ligand-gated ion channels. CE-PC offers a
powerful means for identifying receptor ligands based on the combinat
ion of the characteristic receptor responses they evoke and their diff
erential electrophoretic migration rates. Corner frequencies, membrane
reversal potentials, and mean and unitary single-channel receptor res
ponses were calculated from currents recorded with patch clamp detecti
on. This information was then combined with the electrophoretic mobili
ty of the receptor ligand, which is proportional to the charge-to-fric
tional-drag ratio of that species. We applied CE-PC to separate and de
tect the endogenous receptor agonists gamma-aminobutyrate and L-glutam
ate and the synthetic glutamate receptor agonists N-methyl-D-aspartate
and kainic acid. We present dose-response data for electrophoreticall
y separated kainic acid and discuss its implications for making the CE
-PC detection system quantitative.