The Cyt b(6)f complex from plant chloroplasts, the green alga Chlamydo
monas reinhardtii, and the thermophilic cyanobacterium, Mastigocladus
laminosus, can be isolated in a highly active state, in which it is di
meric and contains one bound chlorophyll a molecule per monomeric unit
. The latter feature is a distinguishing trait compared to the bc(1) c
omplex of bacterial photosynthesis and the respiratory chain. In contr
ast to the trans-membrane domains of the b(6)f complex, and of most ot
her integral membrane proteins, which are characterized by an a-helica
l structure, the p-side peripheral domains, consisting of Cyt f and th
e Rieske protein, have a predominantly beta-strand secondary structure
motif. One consequence of this motif is an extension of these polypep
tides from the membrane surface. For example, the length of Cyt f is 7
5 Angstrom. The heme Fe is 45 Angstrom from the a-carbon of Arg250 at
the membrane bilayer interface and, even though Cyt f may be tilted re
lative to the membrane plane, the heme electron transfer reactions are
carried out far from the membrane surface. The presence of an interna
l 5 water chain, which has the properties of a proton wire, with one w
ater H-bonded to the histidine-25 heme ligand, also suggests that the
pathway of long distance H+ translocation traverses the extended p-sid
e protein domain of the b(6)f complex. A mechanism of H+ transfer in t
he chain that is coupled to the redox state of the heme, in which a pr
oton is transferred into the chain to compensate the extra electron in
the ferro-heme, is proposed.