Musa species are among the tallest monocotyledons and include major fo
od-producing species. The principal cultivars, derived from two major
species Musa acuminata ('A' genome) and Musa balbisiana ('B' genome),
are polyploid hybrids (mainly AAA, AAB and ABB triploids), medium to h
ighly sterile, parthenocarpic and clonally propagated. Bananas and pla
ntains are crops to which molecular breeding is expected to have a pos
itive impact. In order to better understand banana genetics, more know
ledge has to be accumulated about the complex genome structure of hybr
ids and cultivars. Therefore, the aim of our work is to develop molecu
lar markers that are codominant, reliable, universal, highly polymorph
ic and that are applicable to collaborative Musa germplasm genotyping
and mapping. Two size-selected genomic libraries have been screened fo
r the presence of simple sequence repeats (SSR). Our data demonstrate
that SSR are readily applicable to the study of Musa genetics. Our com
prehensive analyses of a significant number of banana sequence tagged
microsatellite sites (STMS) will add to our knowledge on the structure
and phylogeny of genomes of the Musa species, and suggest that micros
atellites be used as anchor markers for a banana genetic core map. Add
itional markers, such as e.g. CAPS have also been tested in order to i
ncrease the detection of polymorphisms exceeding that revealed by STMS
technology. The utility of PCR-derived markers for collaborative gene
tic analyses of the banana genome, and the transferability of 'streaml
ined' laboratory techniques and data analysis to Developing Countries
are discussed.