Recent investigations have suggested a high prevalence of Y chromosome
submicroscopic deletions in men with severely impaired spermatogenesi
s, We evaluated the frequency of Y chromosome deletions in 160 inferti
le men using a series of 36 sequence-tagged-sites, emphasizing interva
ls 5 and 6 of the long arm of the Y chromosome, peripheral leukocyte D
NA was extracted and amplified with two parallel techniques to minimiz
e potential overestimation of the frequency of deletions, The presence
of deletions was evaluated relative to patient's sperm concentration,
testis volume, and hormonal parameters, Men with sperm concentration
<5 x 10(6)/ml had a 7% prevalence of submicroscopic Y chromosome delet
ions, Deletions were detected in 7% of azoospermic men, 10% of men wit
h <1 x 10(6) spermatozoa/ml, and 8% of men with >1 x 10(6) but <5 x 10
(6) spermatozoa/ml. Other clinical parameters did not identify men wit
h Y chromosome deletions prior to polymerase chain reaction (PCR)-base
d testing for the presence of sequence-tagged-sites. Two distinct regi
ons of Y chromosome deletions were detected, similar to 3.6 Mh and 1.4
Mb in length respectively, These deleted regions are present in AZFb
and AZFc respectively, No deletions were detected in AZFa. The loss of
these two distinct areas is supported by the finding of highly repeti
tive sequences along the Y chromosome, predisposing to deletion of spe
cific intervals on the Y chromosome during meiosis, Men with severe ma
le infertility are at high risk for Y chromosome deletions, Testing of
men for these genetic abnormalities is indicated prior to treatment w
ith assisted reproduction.