COMPARATIVE-ANALYSIS OF THE POLYCYSTIC KIDNEY-DISEASE-1 (PKD1) GENE REVEALS AN INTEGRAL MEMBRANE GLYCOPROTEIN WITH MULTIPLE EVOLUTIONARY CONSERVED DOMAINS
R. Sandford et al., COMPARATIVE-ANALYSIS OF THE POLYCYSTIC KIDNEY-DISEASE-1 (PKD1) GENE REVEALS AN INTEGRAL MEMBRANE GLYCOPROTEIN WITH MULTIPLE EVOLUTIONARY CONSERVED DOMAINS, Human molecular genetics, 6(9), 1997, pp. 1483-1489
PKD1 is the major locus of the common genetic disorder autosomal domin
ant polycystic kidney disease (ADPKD). Analysis of the predicted prote
in sequence of the human PKD1 gene, polycystin, shows a large molecule
with a unique arrangement of extracellular domains and multiple putat
ive transmembrane regions, The precise function of polycystin remains
unclear with a paucity of mutations to define key structural and funct
ional domains. To refine the structure of this protein we have cloned
the genomic region encoding the Fugu PKD1 gene. Fugu PKD1 spans 36 kb
of genomic DNA and has greater complexity with 54 exons compared with
46 in man. Comparative analysis of the predicted protein sequences sho
ws a lower level of homology than in similar studies with identity of
40 and 59% similarity, However key structural motifs including leucine
rich repeats (LRR), a C-type lectin and LDL-A like domains and 16 PKD
repeats are maintained, A region of homology with the sea urchin REJ
protein was also confirmed in Fugu but found to extend over 1000 amino
acids. Several highly conserved intra-and extra-cellular regions, wit
h no known sequence homologies, that are likely to be of functional im
portance were detected, The likely structure of the membrane associate
d region has been refined with similarity to the PKD2 protein and volt
age gated Ca2+ and Na+ channels highlighted over part of this area, Th
e overall protein structure has therefore been clarified and this comp
arative analysis derived structure will form the basis for the functio
nal study of polycystin and its individual domains.