For many years, DNA gyrase was thought to be responsible both for unli
nking replicated daughter chromosomes and for controlling negative sup
erhelical tension in bacterial DNA. However, in 1990 a homolog of gyra
se, topoisomerase IV, that had a potent decatenating activity was disc
overed. It is now clear that topoisomerase IV, rather than gyrase, is
responsible for decatenation of interlinked chromosomes. Moreover, top
oisomerase IV is a target of the 4-quinolones, antibacterial agents th
at had previously been thought to target only gyrase. The key event in
quinolone action is reversible trapping of gyrase-DNA and topoisomera
se IV-DNA complexes. Complex formation with gyrase is followed by a ra
pid, reversible inhibition of DNA synthesis, cessation of growth, and
induction of the SOS response. At higher drug concentrations, cell dea
th occurs as double-strand DNA breaks are released from trapped gyrase
and/or topoisomerase IV complexes. Repair of quinolone-induced DNA da
mage occurs largely via recombination pathways. In many gram-negative
bacteria resistance to moderate levels of quinolone arises from mutati
on of the gyrase A protein and resistance to high levels of quinolone
arises from mutation of a second gyrase and/or topoisomerase IV site.
For some gram-positive bacteria, the situation is reversed: primary re
sistance occurs through changes in topoisomerase IV while gyrase chang
es give additional resistance. Gyrase is also trapped on DNA by lethal
gene products of certain large, low-copy-number plasmids. Thus, quino
lone-topoisomerase biology is providing a model for understanding aspe
cts of host-parasite interactions and providing ways to investigate ma
nipulation of the bacterial chromosome by topoisomerases.