R-ST CALC - A COLLECTION OF COMPUTER-PROGRAMS FOR CALCULATING ESTIMATES OF GENETIC DIFFERENTIATION FROM MICROSATELLITE DATA AND DETERMININGTHEIR SIGNIFICANCE

Authors
Citation
Sj. Goodman, R-ST CALC - A COLLECTION OF COMPUTER-PROGRAMS FOR CALCULATING ESTIMATES OF GENETIC DIFFERENTIATION FROM MICROSATELLITE DATA AND DETERMININGTHEIR SIGNIFICANCE, Molecular ecology, 6(9), 1997, pp. 881-885
Citations number
36
Categorie Soggetti
Ecology,Biology
Journal title
ISSN journal
09621083
Volume
6
Issue
9
Year of publication
1997
Pages
881 - 885
Database
ISI
SICI code
0962-1083(1997)6:9<881:RC-ACO>2.0.ZU;2-9
Abstract
R-ST, an analogue of F-ST, provides a convenient approach for estimati ng levels of genetic differentiation from microsatellite data. This pa per examines current approaches for calculating estimates of R-ST and suggests a weighting scheme based on the transformation of allele size s at loci across data sets. Combined within an analysis of variance fr amework this scheme yields an estimator of R-ST analogous to the theta estimator of F-ST. Software for the IBM-PC is described which carries out such calculations and assesses the significance of R-ST or Nm est imates using bootstrap and permutation tests.