R-ST CALC - A COLLECTION OF COMPUTER-PROGRAMS FOR CALCULATING ESTIMATES OF GENETIC DIFFERENTIATION FROM MICROSATELLITE DATA AND DETERMININGTHEIR SIGNIFICANCE
Sj. Goodman, R-ST CALC - A COLLECTION OF COMPUTER-PROGRAMS FOR CALCULATING ESTIMATES OF GENETIC DIFFERENTIATION FROM MICROSATELLITE DATA AND DETERMININGTHEIR SIGNIFICANCE, Molecular ecology, 6(9), 1997, pp. 881-885
R-ST, an analogue of F-ST, provides a convenient approach for estimati
ng levels of genetic differentiation from microsatellite data. This pa
per examines current approaches for calculating estimates of R-ST and
suggests a weighting scheme based on the transformation of allele size
s at loci across data sets. Combined within an analysis of variance fr
amework this scheme yields an estimator of R-ST analogous to the theta
estimator of F-ST. Software for the IBM-PC is described which carries
out such calculations and assesses the significance of R-ST or Nm est
imates using bootstrap and permutation tests.