Fibrinogen, a 340 kDa glycoprotein, was purified from human plasma, se
parated into its constituent polypeptide chains and analyzed by electr
ospray ionization mass spectrometry. Six individual plasmas were exami
ned, and whilst the A alpha chain appeared homogeneous, the B beta and
gamma chains were heterogeneous with the predominant form of each lac
king a single sialic acid residue. The mean molecular masses of the do
minant gamma and B beta isoforms were 48,366 and 54,200 Da with standa
rd deviations of 10 and 12 Da respectively compared to predictions, ba
sed on amino acid and carbohydrate sequences, of 48,368 and 54,213 Da.
The mean mass of the A alpha chain was 66,196 Da but this showed sign
ificantly more variation with a standard deviation of 64 Da. This prob
ably reflects genetic and/or post-translational differences, since the
re is non-stoichiometric phosphorylation at Ser 3 and 345 and the expe
cted residue weight of the non-phosphorylated chain is 66,132 Da. Afte
r treatment with thrombin the fibrin beta chain showed a decrease in m
ass of 1542 Da in good agreement with the expected decrease of 1535 Da
resulting from loss of the B peptide. Loss of the A peptide from the
alpha chain resulted in a decrease of 1546 Da compared to an expected
loss of 1519 Da for non-phosphorylated A peptide, On prolonged thrombi
n incubations factor XIII induced gamma-gamma dimers were observed at
96,896 Da.