A COMPARISON OF CLUSTERING METHODS FOR RIVER BENTHIC COMMUNITY ANALYSIS

Citation
Y. Cao et al., A COMPARISON OF CLUSTERING METHODS FOR RIVER BENTHIC COMMUNITY ANALYSIS, Hydrobiologia, 347, 1997, pp. 25-40
Citations number
64
Categorie Soggetti
Marine & Freshwater Biology
Journal title
ISSN journal
00188158
Volume
347
Year of publication
1997
Pages
25 - 40
Database
ISI
SICI code
0018-8158(1997)347:<25:ACOCMF>2.0.ZU;2-L
Abstract
Four commonly used clustering methods (UPGMA, Ward Linkage, Complete L inkage and TWINSPAN) were compared in their ability to recognise the s tructure of three river macroinvertebrates datasets which were pre- de termined based on habitat and biological characteristics or chemical w ater quality of sampling sites. DCA, NMDS and ANOSIM were applied to t he same datasets to provide further information about data structure, and nonparametric tests were also undertaken on major chemical variabl es to justify the predeterminations. The modified Rand Index was used to measure the agreement between a particular solution and the pre-det ermined classification. The results showed that Ward Linkage performed best when its use was broadened and used with the CY Dissimilarity Me asure, followed by TWINSPAN and Complete Linkage with UPGMA being leas t successful. There was evidence to suggest that the effectiveness of some clustering methods (e.g. UPGMA) may vary at different clustering levels, and simulation techniques which have been used to assess clust ering methods could leave some properties of clustering methods unexam ined.