The narrow-focused Ga-ion beam (FIB) technique has the two functions o
f etching and deposition. Using each of the functions (etching or depo
sition) of FIB independently, we have fabricated high-T-c Josephson ju
nctions with structures of two types both on MgO and SrTiO3 substrates
. We studied the current-voltage characteristics of these junctions an
d the interfaces of these junctions were observed by cross-sectional t
ransmission electron microscopy. Both FIB junctions have been confirme
d to be grain boundary junctions. The formation of the gain boundary i
n these junctions strongly depends on the crystal structures of NdBaCu
O (perovskite-like), MgO (face centered cubic); SrTiO3 (perovskite-lik
e) and tungstein (body centered cubic) deposited by a focused ion beam
chemical vapor deposition, and the degree of the lattice mismatch bet
ween them.