Even though the contribution of water ecosystems for disseminating ent
eric viral pathogens has been known for decades, the importance of wil
d virions iii structuring aquatic communities and food webs has only c
ome to light relatively recently. Evidences of viral infections in bot
h pro-and eukaryotic phytoplankton, as well as in heterotrophic bacter
io-and protozooplankton, have recently brought marine biologists to qu
estion the impact of viroplankton on processes such as (1) the mortali
ty of microorganisms, (2) the nutrition of heterotrophic protists, (3)
the promotion of genetic material exchanges among microbial populatio
ns, (4) the maintenance of species diversity, (5) the induction of pla
nktonic aggregates, and (6) the cycling of organic matter in aquatic e
cosystems. In this paper, all these points are reviewed and discussed,
in the light of recent contributions to the ecology of aquatic viruse
s, for evidence of the impact of viruses on both steady and non-steady
state processes in fresh- and salt-waters. Viruses are ubiquitous, ab
undant and dynamic components of pelagic ecosystems. They are, undoubt
edly, more diversified than the phage-like morphotypes that are genera
lly characterized by the presence of an icosa- or octahedral head and
a tail, via observations under electron microscope. The diversity of p
lanktonic viruses is further enhanced from the genetic viewpoint, and
likely implies the diversity of sensible hosts. Genetically related ma
rine phages are likely widely distributed in the space (i. e. without
significant geographical segregation), suggesting prevalence of a redu
ced competition among viral ''populations'', and that the main biotic
limiting factor for a viral ''species'' production is the density of t
he sensible host. Some viral ''species'', known from marine systems, t
ypically harbor knob-like projections and long spines (i. e. previousl
y not noted from non.-aquatic habitats), which are suggested to increa
se the efficiency of hitting a specific host, especially in oligotroph
ic waters. Despite the general scarcity of viral isolates that lyse ci
liated protozooplankton and metazoan zooplankton, it is becoming incre
asingly evident that most of the pelagic pro-and eukaryotic organisms
are subject to infectious attacks from ambient ''free-living'' viruses
. Quantitatively, recent total counts from the plankton generally fall
in between 10(4) and 10(8) viruses ml(-1), with seasonal high densiti
es in spring and summer, and a lowering tendency in abundance from the
coastal to the open marine systems, and from the surface to the depth
waters, likely in relation to temperature and the organic matter load
. it was recently shown that lytic infection, rather than induction of
lysogeny, is responsible for the majority of bacteriophage production
in the plankton, especially in the coastal marine and surface waters
and during blooming events, where the threshold-product level of virus
x bacteria numbers of greater than or equal to 10(12) for the start o
f a viral-lytic activity is generally achieved. Closed linear relation
ships have been reported between viroplankton dynamics and bacteria, a
lgae and nutrients. Because of the preponderance of allochtonous organ
ic matter and cyanobacterial cells in lakes as compared to oceanic sys
tems, the virus-to-bacteria ratio in lakes are significantly higher th
an in marines systems, although there is little trend in the virus-to-
bacteria ratio with increasing trophy, and despite the occurrence of m
ore bacteria per unit chlorophyll in lake samples. The functional impa
ct of virions on the structure and metabolism of planktonic communitie
s is more important than their quantitative importance, as viruses rep
resent only a minor fraction of the total planktonic biomass. The vira
l-induced mortality of microbial communities in marine systems is esti
mated to represent about 30 and < 10 pour 100 of the mortality of bact
erio- and phytoplankton, respectively. Based on one study, the contrib
ution of viruses to bacterial mortality in lakes seems considerably lo
wer than in marine systems. The greatest impact of viruses on aquatic
communities is likely through hazardous (i.e. non-steady state) proces
ses which are difficult to quantified, such as the promotion of geneti
c material exchanges among populations and the maintenance of species
diversity. The lytic pressure from virulent viruses may act as a ''non
stop'' inductor of modifications in the genetic heritage of host-organ
isms, thereby increasing the potential of these hosts to share their h
abitat with homologous species, i.e. with similar nutritional requirem
ents. It has recently been shown that lysates resulting from phage inf
ection can caused a significant increase in metabolic activity of noni
nfected bacterioplankton community, but the growth efficiency of these
noninfected hosts decreased in the presence of viruses, likely becaus
e of the increase in bacterial energy demand associated with extracell
ular degradation of polymers that are prevalent in viral lysates. This
seems to verify the hypothesis on a substantial contribution of the l
ytic activity from viruses, to the cycling of organic matter in aquati
c systems. Viral lytic production may indeed (1) reduce the bacterial
biomass contribution to the transfer of metabolic energy on to higher-
order consumers, (2) result in an increase of bacterial secondary prod
uction in the absence of an increase in the ambient primary production
, and (3) increase competition between bacterial exo- or ectoenzyme ac
tivity and the feeding activity of protozoa on high molecular weight p
olymers (including viruses), although ingestion of viruses by protists
seems to be of less importance in the carbon flows through the microb
ial food web in pelagic systems. However, almost all studies on the ec
ology of pelagic viruses are done during a limited period of year, mai
nly in marine waters situated in temperate zones. The data discussed i
n this paper are thus to be considered as preliminary data. Neverthele
ss, viruses undoubtedly influence to various degrees the biological pr
ocesses in aquatic ecosystems. The quantitative assessment of their fu
nctional impact is thus required for incorporation into models that si
mulate flues of matter, nutrients and energy in aquatic systems. This
task is to be include on the agenda of both marine and freshwater biol
ogists, as a high priority concern for the near future.