Long chain polyunsaturated fatty acids are focusing the interest of re
searchers as long as analytical techniques are being improved. The Lep
age and Roy direct transesterification method is being widely used to
measure fatty acid content of microalgae which are proposed as potenti
al sources of these products. In this paper, the physical state of the
biomass to be analyzed is studied. Comparison has been stated between
lyophilized biomass and wet biomass just harvested. Furthermore, the
amount of sample and the number of methyl ester extractions have also
been studied. From the statistical analysis carried out, wet biomass t
o fatty acid determination and the adecuate range of sample are propos
ed. Three methyl ester extractions improve the resolution of GC analys
is.